Hi Mukul,
May I know who will pay the money? Are you going to create commercial Invoice on customer name or Transporter name?
Have you tried POD (proof of delivery concept). Check if that can be useful to your scenario.
Check the link for POD concept.
http://scn.sap.com/docs/DOC-27487
If this is not suitable then you can think of consignment process. But this is more useful when you don't know who is the actual customer till the time your consignment customer creates the order.
So, please validate both the options and proceed.
Regards, Sai Krishna.